ttScreening: Genome-Wide DNA Methylation Sites Screening …
ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. A screening process utilizing training and testing samples to filter out uninformative …
Screening genome-wide DNA methylation CpG sites via …
The ttScreening method selected 9 CpG sites and the other two methods selected 0 CpG sites. Conclusions. Our simulation results indicate that ttScreening performs better than FDR-based screening and that it is at least as good as Bonferroni in terms of correctly identifying CpG sites that are associated with other variables. The package is ...
ttScreening-package : Genome-Wide DNA Methylation Sites …
In ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. Description Details Author(s) References See Also. Description. A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing …
A conceptual representation of the training and testing …
Download scientific diagram | A conceptual representation of the training and testing algorithm. from publication: An Efficient Approach to Screening Epigenome-Wide Data | Screening cytosine ...
Genome-Wide DNA Methylation Sites Screening by Use of …
ttScreening-package: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples: irwsva.build2: Adjusted irwsva.build which builds surrogate variables from gene expression data: num.sv2: Adjusted num.sv which estimates the number of important surrogate variables from a gene expression data set. sva2
A screening process built upon training and testing samples
A screening process built upon training and testing samples Description. A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing samples.
ttScreening API and function index
API and function index for ttScreening. rdrr.io Find an R package R language docs Run R in your browser. ttScreening Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. Package index. Search the ttScreening package. Vignettes. Package overview ...
Package: ttScreening (via r-universe)
2 ttScreening-package ttScreening-package Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples Description A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing samples.
10 important CpG sites out of 2000 | Download …
Download scientific diagram | 10 important CpG sites out of 2000 from publication: An Efficient Approach to Screening Epigenome-Wide Data | Screening cytosine-phosphate-guanine dinucleotide (CpG ...
Genome-Wide DNA Methylation Sites Screening by Use of …
ttScreening-package: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples: irwsva.build2: Adjusted irwsva.build which builds surrogate variables from …
ttScreening R Package Stats, Author, Search and Tutorials
R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r …
Comparison And Application Of Screening Methods For …
Therefore, in this thesis, we compared the performance of ttScreening and RRF with simulation studies and applied to a real data example in identifying potential CpG sites at birth of the …
R: Genome-Wide DNA Methylation Sites Screening by Use of...
A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing …
CRAN: Package ttScreening
ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.
Issues · lxie3/ttScreening_repeated
Contribute to lxie3/ttScreening_repeated development by creating an account on GitHub. Skip to content Toggle navigation. Sign up Product Actions. Automate any workflow Packages. Host and manage packages Security. Find and fix vulnerabilities Codespaces. Instant dev environments ...
ttScreening: Genome-Wide DNA Methylation Sites …
Description A screening process utilizing training and testing samples to filter out uninforma-tive DNA methylation sites. Surrogate variables (SVs) of DNA methylation are in-cluded in the …
Comparison And Application Of Screening Methods For …
Many epigenetic studies used either the Training-Testing Screening (ttScreening) or the Recursive Random Forest (RRF), however, the comparison of those two methods has not been discussed. Therefore, in this thesis, we compared the performance of ttScreening and RRF with simulation studies and applied to a real data example in identifying ...
ttScreening
The ttScreening package contains the following man pages: irwsva.build2 num.sv2 sva2 ttScreening ttScreening-package. rdrr.io Find an R package R language docs Run R in your browser. ttScreening Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. Package index. Search the ttScreening package ...
ttScreening-package function
A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing samples. Surrogate variables are included to account for unknown factors.
ttScreening_repeated/ttScreening_repeated.R at main · lxie3/ttScreening …
Contribute to lxie3/ttScreening_repeated development by creating an account on GitHub.
ttScreening: Genome-Wide DNA Methylation Sites …
Package 'ttScreening' October 14, 2022 Type Package Title Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples Version 1.6 Date Author Meredith Ray, Xin Tong, Hongmei Zhang Maintainer Meredith Ray
Ttscreening Plant For Iron Ore Its Introduction
In the process of raw material in a large iron and steel plant, blending stockyard is the core for technical control. The quality of blending ore will directly affect the quality of sinter, and then affect the stability, smooth operation, and high production of blast furnace [].The blending process is mainly composed of three steps: blending …
TTSCREENING Medical Abbreviation Meaning
Discover Medical Abbreviations: Dive deeper into a comprehensive list of top-voted Medical Acronyms and Abbreviations. Explore ttScreening Definitions: Discover the complete range of meanings for ttScreening, beyond just its connections to Medical. Contribute an Abbreviation: Have an abbreviation we haven't listed?Add your knowledge to our database and help expand …
An Efficient Approach to Screening Epigenome-Wide Data
Screening cytosine-phosphate-guanine dinucleotide (CpG) DNA methylation sites in association with some covariate (s) is desired due to high dimensionality. We incorporate surrogate …
TTSCREENING Epidemiology Abbreviation
Discover Epidemiology Abbreviations: Dive deeper into a comprehensive list of top-voted Epidemiology Acronyms and Abbreviations. Explore ttScreening Definitions: Discover the complete range of meanings for ttScreening, beyond just its connections to Epidemiology. Contribute an Abbreviation: Have an abbreviation we haven't listed?Add your knowledge to …
CRAN Package Check Results for Package ttScreening
Check Details. Version: 1.6 Check: Rd cross-references Result: NOTE Found the following Rd file(s) with Rd link{} targets missing package anchors: ttScreening-package.Rd: sva Please provide package anchors for all Rd link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows …
An Efficient Approach to Screening Epigenome-Wide Data
To make it easier to users, this screening method is built into a user-friendly R package, ttScreening, with efficient algorithms implemented. Various simulations were implemented to examine the robustness and sensitivity of the method compared to the classical approaches controlling for multiple testing: the false discovery rates-based (FDR ...
ttScreening: A screening process built upon training and …
A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined …
ttScreening/MD5 at master · cran/ttScreening
:exclamation: This is a read-only mirror of the CRAN R package repository. ttScreening — Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples - ttScreening/MD5 at m...
ttScreening_repeated/ttScreening_repeatedmeasures.R at …
Contribute to lxie3/ttScreening_repeated development by creating an account on GitHub.
CRAN: Package ttScreening
A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering …
Ttscreening Plant Condition
Plant thyme in the spring after all threat of frost has passed. You can plant thyme from nursery starts or grow it from seed. When planting in the ground, make sure to choose a sunny location with well-draining soil. Space the plants 12 to 24 inches …
GitHub
This is a read-only mirror of the CRAN R package repository. ttScreening — Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples